Fitting models

Functions for fitting models to data.

senlm()

Fit species-environment non-linear model via maximum likelihood

All functions

All functions exported by the package.

create_default_par_list()

Create default parameter list

create_simulated_datasets()

Create list of simulated data sets

error_distributions()

Error distributions

get_constant_parnames()

Constant parameters names

get_err_dist_parnames()

Error distribution parameters names

get_mean_fun_parnames()

Mean function parameters names

get_parnames()

Model parameters

haul

Haul data set

haul2

Haul data set 2

init_mle()

Initialise parameter vector for maximum likelihood algorithm.

list_all_parnames()

List all model parameters

mean_functions()

Mean functions

msenlm()

Fit multiple species-environment non-linear models via maximum likelihood

msenlm.best()

Find the best model for each response variable from an msenlm object

mu_constant()

Constant mean function.

mu_meanfunction()

Evaluate mean function

plot(<senlm>)

Plot senlm model fit over data

predict(<senlm>)

Predict from senlm model fit

print_models()

Mean functions and error distributions

senlm()

Fit species-environment non-linear model via maximum likelihood

set_model_info()

Set model info

set_models()

Set models

set_sim_par()

Set simulated model parameters

simulate(<senlm>)

Simulate data from senlm model fit

summary(<msenlm>)

Print summary of senlm multiple model fit

summary(<senlm>)

Print summary of senlm model fit